The Glaucophyta: the blue-green plants in a nutshell
Abstract
Keywords
Full Text:
PDFReferences
Skuja H. Glaucophyta. In: Melchior H, Werdermann E, editors. A. Engler’s Syllabus der Pflanzenfamilien. Berlin: Borntraeger; 1954. p. 56–57.
Kies L, Kremer BP. Typification of the Glaucocystophyta. Taxon. 1986;35(1):128–133. http://dx.doi.org/10.2307/1221049
Cavalier-Smith T. Eukaryote kingdoms: seven or nine? Biosystems. 1981;14(3–4):461–481. http://dx.doi.org/10.1016/0303-2647(81)90050-2
Adl SM, Simpson AGB, Farmer MA, Andersen RA, Anderson OR, Barta JR, et al. The new higher level classification of eukaryotes with emphasis on the taxonomy of protists. J Eukaryot Microbiol. 2005;52(5):399–451. http://dx.doi.org/10.1111/j.1550-7408.2005.00053.x
Rodríguez-Ezpeleta N, Brinkmann H, Burey SC, Roure B, Burger G, Löffelhardt W, et al. Monophyly of primary photosynthetic eukaryotes: green plants, red algae, and glaucophytes. Curr Biol. 2005;15(14):1325–1330. http://dx.doi.org/10.1016/j.cub.2005.06.040
Burki F, Inagaki Y, Bråte J, Archibald JM, Keeling PJ, Cavalier-Smith T, et al. Large-scale phylogenomic analyses reveal that two enigmatic protist lineages, Telonemia and Centroheliozoa, are related to photosynthetic chromalveolates. Genome Biol Evol. 2009;1:231–238. http://dx.doi.org/10.1093/gbe/evp022
Hackett JD, Yoon HS, Li S, Reyes-Prieto A, Rummele SE, Bhattacharya D. Phylogenomic analysis supports the monophyly of cryptophytes and haptophytes and the association of Rhizaria with chromalveolates. Mol Biol Evol. 2007;24(8):1702–1713. http://dx.doi.org/10.1093/molbev/msm089
Price DC, Chan CX, Yoon HS, Yang EC, Qiu H, Weber APM, et al. Cyanophora paradoxa genome elucidates origin of photosynthesis in algae and plants. Science. 2012;335(6070):843–847. http://dx.doi.org/10.1126/science.1213561
Qiu H, Yang EC, Bhattacharya D, Yoon HS. Ancient gene paralogy may mislead inference of plastid phylogeny. Mol Biol Evol. 2012;29(11):3333–3343. http://dx.doi.org/10.1093/molbev/mss137
Jackson CJ, Reyes-Prieto A. The mitochondrial genomes of the glaucophytes Gloeochaete wittrockiana and Cyanoptyche gloeocystis: multilocus phylogenetics suggests a monophyletic Archaeplastida. Genome Biol Evol. 2014;6(10):2774–2785. http://dx.doi.org/10.1093/gbe/evu218
Kim E, Graham LE. EEF2 analysis challenges the monophyly of Archaeplastida and Chromalveolata. PLoS One. 2008;3(7):e2621. http://dx.doi.org/10.1371/journal.pone.0002621
Hampl V, Hug L, Leigh JW, Dacks JB, Lang BF, Simpson AGB, et al. Phylogenomic analyses support the monophyly of Excavata and resolve relationships among eukaryotic “supergroups”. Proc Natl Acad Sci USA. 2009;106(10):3859–3864. http://dx.doi.org/10.1073/pnas.0807880106
Nozaki H, Maruyama S, Matsuzaki M, Nakada T, Kato S, Misawa K. Phylogenetic positions of Glaucophyta, green plants (Archaeplastida) and Haptophyta (Chromalveolata) as deduced from slowly evolving nuclear genes. Mol Phylogenet Evol. 2009;53(3):872–880. http://dx.doi.org/10.1016/j.ympev.2009.08.015
Stiller JW. Plastid endosymbiosis, genome evolution and the origin of green plants. Trends Plant Sci. 2007;12(9):391–396. http://dx.doi.org/10.1016/j.tplants.2007.08.002
Parfrey LW, Barbero E, Lasser E, Dunthorn M, Bhattacharya D, Patterson DJ, et al. Evaluating support for the current classification of eukaryotic diversity. PLoS Genet. 2006;2(12):e220. http://dx.doi.org/10.1371/journal.pgen.0020220
Burki F, Okamoto N, Pombert JF, Keeling PJ. The evolutionary history of haptophytes and cryptophytes: phylogenomic evidence for separate origins. Proc Biol Sci. 2012;279(1736):2246–2254. http://dx.doi.org/10.1098/rspb.2011.2301
Yabuki A, Kamikawa R, Ishikawa SA, Kolisko M, Kim E, Tanabe AS, et al. Palpitomonas bilix represents a basal cryptist lineage: insight into the character evolution in Cryptista. Sci Rep. 2014;4:4641. http://dx.doi.org/10.1038/srep04641
Deschamps P, Moreira D. Signal conflicts in the phylogeny of the primary photosynthetic eukaryotes. Mol Biol Evol. 2009;26(12):2745–2753. http://dx.doi.org/10.1093/molbev/msp189
Mackiewicz P, Gagat P. Monophyly of Archaeplastida supergroup and relationships among its lineages in the light of phylogenetic and phylogenomic studies. Are we close to a consensus? Acta Soc Bot Pol. 2014;83(4):263–280. http://dx.doi.org/10.5586/asbp.2014.044
Parfrey LW, Grant J, Tekle YI, Lasek-Nesselquist E, Morrison HG, Sogin ML, et al. Broadly sampled multigene analyses yield a well-resolved eukaryotic tree of life. Syst Biol. 2010;59(5):518–533. http://dx.doi.org/10.1093/sysbio/syq037
Lane CE, Archibald JM. The eukaryotic tree of life: endosymbiosis takes its TOL. Trends Ecol Evol. 2008;23(5):268–275. http://dx.doi.org/10.1016/j.tree.2008.02.004
Ball SG, Subtil A, Bhattacharya D, Moustafa A, Weber APM, Gehre L, et al. Metabolic effectors secreted by bacterial pathogens: essential facilitators of plastid endosymbiosis? Plant Cell. 2013;25(1):7–21. http://dx.doi.org/10.1105/tpc.112.101329
Elias M. The guanine nucleotide exchange factors Sec2 and PRONE: candidate synapomorphies for the Opisthokonta and the Archaeplastida. Mol Biol Evol. 2008;25(8):1526–1529. http://dx.doi.org/10.1093/molbev/msn113
Cavalier-Smith T. The origins of plastids. Biol J Linn Soc. 1982;17(3):289–306. http://dx.doi.org/10.1111/j.1095-8312.1982.tb02023.x
Palmer JD. The symbiotic birth and spread of plastids: how many times and whodunit? J Phycol. 2003;39(1):4–12. http://dx.doi.org/10.1046/j.1529-8817.2003.02185.x
Reyes-Prieto A, Weber AP, Bhattacharya D. The origin and establishment of the plastid in algae and plants. Annu Rev Genet. 2007;41:147–168. http://dx.doi.org/10.1146/annurev.genet.41.110306.130134
Keeling PJ. The endosymbiotic origin, diversification and fate of plastids. Philos Trans R Soc Lond B Biol Sci. 2010;365(1541):729–748. http://dx.doi.org/10.1098/rstb.2009.0103
Gould SB, Waller RF, McFadden GI. Plastid evolution. Annu Rev Plant Biol. 2008;59:491–517. http://dx.doi.org/10.1146/annurev.arplant.59.032607.092915
Stoebe B, Kowallik KV. Gene-cluster analysis in chloroplast genomics. Trends Genet. 1999;15(9):344–347. http://dx.doi.org/10.1016/S0168-9525(99)01815-6
Reyes-Prieto A, Bhattacharya D. Phylogeny of Calvin cycle enzymes supports Plantae monophyly. Mol Phylogenet Evol. 2007;45(1):384–391. http://dx.doi.org/10.1016/j.ympev.2007.02.026
Reyes-Prieto A, Moustafa A. Plastid-localized amino acid biosynthetic pathways of Plantae are predominantly composed of non-cyanobacterial enzymes. Sci Rep. 2012;2:955. http://dx.doi.org/10.1038/srep00955
McFadden GI, van Dooren GG. Evolution: red algal genome affirms a common origin of all plastids. Curr Biol. 2004;14(13):R514–R516. http://dx.doi.org/10.1016/j.cub.2004.06.041
Steiner JM, Yusa F, Pompe JA, Löffelhardt W. Homologous protein import machineries in chloroplasts and cyanelles. Plant J. 2005;44(4):646–652. http://dx.doi.org/10.1111/j.1365-313X.2005.02559.x
Linka N, Hurka H, Lang BF, Burger G, Winkler HH, Stamme C, et al. Phylogenetic relationships of non-mitochondrial nucleotide transport proteins in bacteria and eukaryotes. Gene. 2003;306:27–35. http://dx.doi.org/10.1016/S0378-1119(03)00429-3
Stiller JW. Toward an empirical framework for interpreting plastid evolution. J Phycol. 2014;50(3):462–471. http://dx.doi.org/10.1111/jpy.12178
Kim E, Maruyama S. A contemplation on the secondary origin of green algal and plant plastids. Acta Soc Bot Pol. 2014;83(4):331–336. http://dx.doi.org/10.5586/asbp.2014.040
Smith DR, Jackson CJ, Reyes-Prieto A. Nucleotide substitution analyses of the glaucophyte Cyanophora suggest an ancestrally lower mutation rate in plastid vs mitochondrial DNA for the Archaeplastida. Mol Phylogenet Evol. 2014;79:380–384. http://dx.doi.org/10.1016/j.ympev.2014.07.001
Chong J, Jackson C, Kim JI, Yoon HS, Reyes-Prieto A. Molecular markers from different genomic compartments reveal cryptic diversity within glaucophyte species. Mol Phylogenet Evol. 2014;76C:181–188. http://dx.doi.org/10.1016/j.ympev.2014.03.019
Takahashi T, Sato M, Toyooka K, Matsuzaki R, Kawafune K, Kawamura M, et al. Five Cyanophora (Cyanophorales, Glaucophyta) species delineated based on morphological and molecular data. J Phycol. 2014;50(6):1058–1069. http://dx.doi.org/10.1111/jpy.12236
Watanabe M, Sato M, Kondo K, Narikawa R, Ikeuchi M. Phycobilisome model with novel skeleton-like structures in a glaucocystophyte Cyanophora paradoxa. Biochim Biophys Acta. 2012;1817(8):1428–1435. http://dx.doi.org/10.1016/j.bbabio.2011.11.013
Facchinelli F, Pribil M, Oster U, Ebert NJ, Bhattacharya D, Leister D, et al. Proteomic analysis of the Cyanophora paradoxa muroplast provides clues on early events in plastid endosymbiosis. Planta. 2013;237(2):637–651. http://dx.doi.org/10.1007/s00425-012-1819-3
Ball S, Colleoni C, Cenci U, Raj JN, Tirtiaux C. The evolution of glycogen and starch metabolism in eukaryotes gives molecular clues to understand the establishment of plastid endosymbiosis. J Exp Bot. 2011;62(6):1775–1801. http://dx.doi.org/10.1093/jxb/erq411
Watanabe M, Kubota H, Wada H, Narikawa R, Ikeuchi M. Novel supercomplex organization of photosystem I in Anabaena and Cyanophora paradoxa. Plant Cell Physiol. 2011;52(1):162–168. http://dx.doi.org/10.1093/pcp/pcq183
Gross J, Wajid S, Price DC, Zelzion E, Li J, Chan CX, et al. Evidence for widespread exonic small RNAs in the glaucophyte alga Cyanophora paradoxa. PLoS One. 2013;8(7):e67669. http://dx.doi.org/10.1371/journal.pone.0067669
Duanmu D, Bachy C, Sudek S, Wong CH, Jimenez V, Rockwell NC, et al. Marine algae and land plants share conserved phytochrome signaling systems. Proc Natl Acad Sci USA. 2014;11(44):15827–15832. http://dx.doi.org/10.1073/pnas.1416751111
Rockwell NC, Duanmu D, Martin SS, Bachy C, Price DC, Bhattacharya D, et al. Eukaryotic algal phytochromes span the visible spectrum. Proc Natl Acad Sci USA. 2014;111(10):3871–3876. http://dx.doi.org/10.1073/pnas.1401871111
Bhattacharya D, Schmidt HA. Division Glaucocystophyta. In: Bhattacharya D, editor. Origins of algae and their plastids. Plant systematics and evolution – supplement 11. Vienna: Springer Verlag; 1997. p. 139–148. http://dx.doi.org/10.1007/978-3-7091-6542-3_7
Yang Y, Maruyama S, Sekimoto H, Sakayama H, Nozaki H. An extended phylogenetic analysis reveals ancient origin of “non-green” phosphoribulokinase genes from two lineages of “green” secondary photosynthetic eukaryotes: Euglenophyta and Chlorarachniophyta. BMC Res Notes. 2011;4:330. http://dx.doi.org/10.1186/1756-0500-4-330
Marin B, Klingberg M, Melkonian M. Phylogenetic relationships among the Cryptophyta: analyses of nuclear-encoded SSU rRNA sequences support the monophyly of extant plastid-containing lineages. Protist. 1998;149(3):265–276. http://dx.doi.org/10.1016/S1434-4610(98)70033-1
Burki F, Shalchian-Tabrizi K, Pawlowski J. Phylogenomics reveals a new “megagroup” including most photosynthetic eukaryotes. Biol Lett. 2008;4(4):366–369. http://dx.doi.org/10.1098/rsbl.2008.0224
Pascher A. Studien über Symbiosen. I. Über einige Endosymbiosen von Blaualgen in Einzellern. Jahrb Wss Bot. 1929;71:286–462.
Schenk HEA. Cyanophora paradoxa: anagenetic model or missing link of plastid evolution. Endocytobiosis Cell Res. 1994;10:87–106.
Chapman DJ. The pigments of the symbiotic algae (cyanomes) of Cyanophora paradoxa and Glaucocystis nostochinearum and two Rhodophyceae, Porphyridium aerugineum and Asteroeytis ramosa. Arch fur Mikrobiol. 1966;55:17–25. http://dx.doi.org/10.1007/BF00409152
Hall W. T, Claus G. Ultrastructural studies on the blue-green algal symbiont in Cyanophora paradoxa Korschikoff. J Cell Biol. 1963;19:551–563. http://dx.doi.org/10.1083/jcb.19.3.551
Herdman M, Stanier RY. The cyanelle: chloroplast or endosymbiotic prokaryote? FEMS Microbiol Lett. 1977;1(1):7–11. http://dx.doi.org/10.1111/j.1574-6968.1977.tb00568.x
Kies L. Zur systematischen Einordnung von Cyanophora paradoxa, Gloeochaete wittrockiana und Glaucocystis nostochinearum. Ber Dtsch Bot Ges. 1979;92(1):445–454. http://dx.doi.org/10.1111/j.1438-8677.1979.tb03291.x
Giovannoni SJ, Turner S, Olsen GJ, Barns S, Lane DJ, Pace NR. Evolutionary relationships among cyanobacteria and green chloroplasts. J Bacteriol. 1988;170(8):3584–3592.
Douglas SE, Turner S. Molecular evidence for the origin of plastids from a cyanobacterium-like ancestor. J Mol Evol. 1991;33(3):267–273. http://dx.doi.org/10.1007/BF02100678
Stirewalt VL, Michalowski CB, Löffelhardt W, Bohnert HJ, Bryant DA. Nucleotide sequence of the cyanelle genome from Cyanophora paradoxa. Plant Mol Biol Report. 1995;13(4):327–332. http://dx.doi.org/10.1007/BF02669186
Löffelhardt W, Bohnert HJ. The cyanelle (muroplast) of Cyanophora paradoxa: a paradigm for endosymbiotic organelle evolution. In: Seckbach J, editor. Symbiosis. Mechanisms and model systems. Cellular origin, Life in extreme habitats and astrobiology. Volume 4. Dordrecht: Kluwer Academic Publishers; 2001. p. 111–130. http://dx.doi.org/10.1007/0-306-48173-1_7
Fathinejad S, Steiner JM, Reipert S, Marchetti M, Allmaier G, Burey SC, et al. A carboxysomal carbon-concentrating mechanism in the cyanelles of the “coelacanth” of the algal world, Cyanophora paradoxa? Physiol Plant. 2008;133(1):27–32. http://dx.doi.org/10.1111/j.1399-3054.2007.01030.x
Steiner JM, Löffelhardt W. The photosynthetic apparatus of the living fossil, Cyanophora paradoxa. In: Peschek GA, Obinger C, Renger G, editors. Bioenergetic processes of cyanobacteria. Dordrecht: Springer Netherlands; 2011. p. 71–87. http://dx.doi.org/10.1007/978-94-007-0388-9_2
Bhattacharya D, Price DC, Gross J, Chan CX, Steiner JM, Löffelhardt W. Analysis of the genome of Cyanophora paradoxa: an algal model for understanding primary endosymbiosis. In: Löffelhardt W, editor. Endosymbiosis. Vienna: Springer; 2014. p. 135–148. http://dx.doi.org/10.1007/978-3-7091-1303-5_7
Lauterborn R. Protozoenstudien II. Paulinella chromatophora nov. gen., nov. spec., ein beschalter Rhizopode des Süsswassers mit blaugrünen chromatophorenartigen Einschlüssen. Zeitschrift für wissenschaftliche Zool. 1895;59:537–544.
Kies L. Elektronenmikroskopische Untersuchungen an Paulinella chromatophora Lauterborn, einer Thekamöbe mit blau-grünen Endosymbionten (Cyanellen). Protoplasma. 1974;80(1–3):69–89. http://dx.doi.org/10.1007/BF01666352
Marin B, Nowack ECM, Melkonian M. A plastid in the making: evidence for a second primary endosymbiosis. Protist. 2005;156(4):425–432. http://dx.doi.org/10.1016/j.protis.2005.09.001
Mignot JP, Joyon L, Pringsheim EG. Quelques Particularités Structurales de Cyanophora paradoxa Korsch., Protozoaire Flagellé. J Protozool. 1969;16(1):138–145. http://dx.doi.org/10.1111/j.1550-7408.1969.tb02245.x
Thompson A. The flagella of Cyanophora paradoxa Korsch. S Afr J Bot. 1973;39:35–39.
Kugrens P, Clay BL, Meyer CJ, Lee RE. Ultrastructure and description of Cyanophora biloba, sp. nov., with additional observations on C. paradoxa (Glaucophyta). J Phycol. 1999;35(4):844–854. http://dx.doi.org/10.1046/j.1529-8817.1999.3540844.x
Viola R, Nyvall P, Pedersén M. The unique features of starch metabolism in red algae. Proc Biol Sci. 2001;268(1474):1417–1422. http://dx.doi.org/10.1098/rspb.2001.1644
Plancke C, Colleoni C, Deschamps P, Dauvillée D, Nakamura Y, Haebel S, et al. Pathway of cytosolic starch synthesis in the model glaucophyte Cyanophora paradoxa. Eukaryot Cell. 2008;7(2):247–257. http://dx.doi.org/10.1128/EC.00373-07
Nomura T, Nakayama N, Murata T, Akazawa T. Biosynthesis of starch in chloroplasts. Plant Physiol. 1967;42(3):327–332. http://dx.doi.org/10.1104/pp.42.3.327
Tester RF, Karkalas J, Qi X. Starch – composition, fine structure and architecture. J Cereal Sci. 2004;39(2):151–165. http://dx.doi.org/10.1016/j.jcs.2003.12.001
Shimonaga T, Fujiwara S, Kaneko M, Izumo A, Nihei S, Francisco PB, et al. Variation in storage alpha-polyglucans of red algae: amylose and semi-amylopectin types in Porphyridium and glycogen type in Cyanidium. Mar Biotechnol. 2007;9(2):192–202. http://dx.doi.org/10.1007/s10126-006-6104-7
Hindak F, Hindakova A. Chalarodora azurea Pascher 1929 – a rare glaucophyte found in the peat-bog Klin (Orava, Northern Slovakia). In: Wołowski K, Kaczmarska I, Ehrman JM, Wojtal AZ, editors. Current advances in algal taxonomy and its applications: phylogenetic, ecological and applied perspective. Kraków: Institute of Botany, Polish Academy of Sciences; 2012. p. 53–60.
Willison JH, Brown RM. Cell wall structure and deposition in Glaucocystis. J Cell Biol. 1978;77(1):103–119. http://dx.doi.org/10.1083/jcb.77.1.103
Schnepf E, Koch W, Deichgraber G. Zur Cytologie und taxonomischen Einordnung von Glaucocystis. Arch Mikrobiol. 1966;55(2):149–174. http://dx.doi.org/10.1007/BF00418636
Kies L. Ultrastructure of Cyanoptyche gloeocystis f. dispersa (Glaucocystophyceae). Plant Syst Evol. 1989;164(1–4):65–73. http://dx.doi.org/10.1007/BF00940430
Lagerheim G. Bidrag till Sveriges algflora. Öfversigt af Kongl. Vetenskaps-Akademiens Förhandlingar. 1883;40(2):37–78.
Korshikov A. Protistologische Beobachtungen. I Cyanophora paradoxa n. g. et sp. Russ Arch Protistol. 1924;3:57–74.
Reddy TBK, Thomas AD, Stamatis D, Bertsch J, Isbandi M, Jansson J, et al. The Genomes OnLine Database (GOLD) v.5: a metadata management system based on a four level (meta)genome project classification. Nucleic Acids Res. 2014; 43:D1099–D1106. http://dx.doi.org/10.1093/nar/gku950
Collén J, Porcel B, Carré W, Ball SG, Chaparro C, Tonon T, et al. Genome structure and metabolic features in the red seaweed Chondrus crispus shed light on evolution of the Archaeplastida. Proc Natl Acad Sci USA. 2013;110(13):5247–5252. http://dx.doi.org/10.1073/pnas.1221259110
Schönknecht G, Chen WH, Ternes CM, Barbier GG, Shrestha RP, Stanke M, et al. Gene transfer from bacteria and archaea facilitated evolution of an extremophilic eukaryote. Science. 2013;339(6124):1207–1210. http://dx.doi.org/10.1126/science.1231707
Nakamura Y, Sasaki N, Kobayashi M, Ojima N, Yasuike M, Shigenobu Y, et al. The first symbiont-free genome sequence of marine red alga, Susabi-nori (Pyropia yezoensis). PLoS One. 2013;8(3):e57122. http://dx.doi.org/10.1371/journal.pone.0057122
Bhattacharya D, Price DC, Chan CX, Qiu H, Rose N, Ball S, et al. Genome of the red alga Porphyridium purpureum. Nat Commun. 2013;4:1941. http://dx.doi.org/10.1038/ncomms2931
Yusa F, Steiner JM, Löffelhardt W. Evolutionary conservation of dual Sec translocases in the cyanelles of Cyanophora paradoxa. BMC Evol Biol. 2008;8:304. http://dx.doi.org/10.1186/1471-2148-8-304
Gross J, Bhattacharya D. Mitochondrial and plastid evolution in eukaryotes: an outsiders’ perspective Nat Rev Genet. 2009;10(7):495–505. http://dx.doi.org/10.1038/nrg2610
Stiller JW, Reel DC, Johnson JC. A single origin of plastids revisited: convergent evolution in organellar genome content. J Phycol. 2003;39(1):95–105. http://dx.doi.org/10.1046/j.1529-8817.2003.02070.x
Stiller JW. Weighing the evidence for a single origin of plastids. J Phycol. 2003;39(6):1283–1285. http://doi.wiley.com/10.1111/j.0022-3646.2003.03-084.x
Larkum AWD, Lockhart PJ, Howe CJ. Shopping for plastids. Trends Plant Sci. 2007;12(5):189–195. http://dx.doi.org/10.1016/j.tplants.2007.03.011
Suzuki K, Miyagishima SY. Eukaryotic and eubacterial contributions to the establishment of plastid proteome estimated by large-scale phylogenetic analyses. Mol Biol Evol. 2010;27(3):581–590. http://dx.doi.org/10.1093/molbev/msp273
Qiu H, Price DC, Weber APM, Facchinelli F, Yoon HS, Bhattacharya D. Assessing the bacterial contribution to the plastid proteome. Trends Plant Sci. 2013;18(12):680–687. http://dx.doi.org/10.1016/j.tplants.2013.09.007
Huang J, Gogarten JP. Did an ancient chlamydial endosymbiosis facilitate the establishment of primary plastids? Genome Biol. 2007;8(6):R99. http://dx.doi.org/10.1186/gb-2007-8-6-r99
Moustafa A, Reyes-Prieto A, Bhattacharya D. Chlamydiae has contributed at least 55 genes to Plantae with predominantly plastid functions. PLoS One. 2008;3(5):e2205. http://dx.doi.org/10.1371/journal.pone.0002205
Deschamps P. Primary endosymbiosis: have cyanobacteria and Chlamydiae ever been roommates? Acta Soc Bot Pol. 2014;83(4):291–302. http://dx.doi.org/10.5586/asbp.2014.048
Facchinelli F, Colleoni C, Ball SG, Weber APM. Chlamydia, cyanobiont, or host: who was on top in the ménage à trois? Trends Plant Sci. 2013;18(12):673–679. http://dx.doi.org/10.1016/j.tplants.2013.09.006
Dagan T, Roettger M, Stucken K, Landan G, Koch R, Major P, et al. Genomes of Stigonematalean cyanobacteria (subsection V) and the evolution of oxygenic photosynthesis from prokaryotes to plastids. Genome Biol Evol. 2013;5(1):31–44. http://dx.doi.org/10.1093/gbe/evs117
Flinner N, Ellenrieder L, Stiller SB, Becker T, Schleiff E, Mirus O. Mdm10 is an ancient eukaryotic porin co-occurring with the ERMES complex. Biochim Biophys Acta. 2013;1833(12):3314–3325. http://dx.doi.org/10.1016/j.bbamcr.2013.10.006
Cai X, Wang X, Clapham DE. Early evolution of the eukaryotic Ca2+ signaling machinery: conservation of the CatSper channel complex. Mol Biol Evol. 2014;31(10):2735–2740. http://dx.doi.org/10.1093/molbev/msu218
Petrželková R, Eliáš M. Contrasting patterns in the evolution of the Rab GTPase family in Archaeplastida. Acta Soc Bot Pol. 2014;83(4):303–315. http://dx.doi.org/10.5586/asbp.2014.052
Martin W, Rujan T, Richly E, Hansen A, Cornelsen S, Lins T, et al. Evolutionary analysis of Arabidopsis, cyanobacterial, and chloroplast genomes reveals plastid phylogeny and thousands of cyanobacterial genes in the nucleus. Proc Natl Acad Sci USA. 2002;99(19):12246–12251. http://dx.doi.org/10.1073/pnas.182432999
Reyes-Prieto A, Hackett JD, Soares MB, Bonaldo MF, Bhattacharya D. Cyanobacterial contribution to algal nuclear genomes is primarily limited to plastid functions. Curr Biol. 2006;16(23):2320–2325. http://dx.doi.org/10.1016/j.cub.2006.09.063
Moustafa A, Bhattacharya D. PhyloSort: a user-friendly phylogenetic sorting tool and its application to estimating the cyanobacterial contribution to the nuclear genome of Chlamydomonas. BMC Evol Biol. 2008;8:6. http://dx.doi.org/10.1186/1471-2148-8-6
Deusch O, Landan G, Roettger M, Gruenheit N, Kowallik KV, Allen JF, et al. Genes of cyanobacterial origin in plant nuclear genomes point to a heterocyst-forming plastid ancestor. Mol Biol Evol. 2008;25(4):748–761. http://dx.doi.org/10.1093/molbev/msn022
Sato N, Ishikawa M, Fujiwara M, Sonoike K. Mass identification of chloroplast proteins of endosymbiont origin by phylogenetic profiling based on organism-optimized homologous protein groups. Genome Inform. 2005;16(2):56–68.
Lang BF, Nedelcu AM. Plastid genomes of algae. In Bock R, Knoop V, editors. Genomics of chloroplasts and mitochondria. Advances in photosynthesis and respiration series. Volume 35. Dordrecht: Springer Netherlands; 2012. p. 59–87. http://dx.doi.org/10.1007/978-94-007-2920-9_3
DePriest MS, Bhattacharya D, López-Bautista JM. The plastid genome of the red macroalga Grateloupia taiwanensis (Halymeniaceae). PLoS One. 2013;8(7):e68246. http://dx.doi.org/10.1371/journal.pone.0068246
Wang L, Mao Y, Kong F, Li G, Ma F, Zhang B, et al. Complete sequence and analysis of plastid genomes of two economically important red algae: Pyropia haitanensis and Pyropia yezoensis. PLoS One. 2013;8(5):e65902. http://dx.doi.org/10.1371/journal.pone.0065902
Tajima N, Sato S, Maruyama F, Kurokawa K, Ohta H, Tabata S, et al. Analysis of the complete plastid genome of the unicellular red alga Porphyridium purpureum. J Plant Res. 2014;127(3):389–397. http://dx.doi.org/10.1007/s10265-014-0627-1
Grossman AR, Talbot L, Egelhoff T. Biosynthesis of phycobilisome polypeptides of Porphyridium aerugineum and Cyanophora paradoxa. In: Year book Carnegie Institution of Washington. Washington, DC: Carnegie Institution of Washington; 1983. p. 112–116.
Steiner JM, Pompe JA, Löffelhardt W. Characterization of apcC, the nuclear gene for the phycobilisome core linker polypeptide L(c)(7.8) from the glaucocystophyte alga Cyanophora paradoxa. Import of the precursor into isolated cyanelles and integration of the mature protein into intact phycobilisomes. Curr Genet. 2003;44(3):132–137. http://dx.doi.org/10.1007/s00294-003-0433-0
Tomitani A, Okada K, Miyashita H, Matthijs HC, Ohno T, Tanaka A. Chlorophyll b and phycobilins in the common ancestor of cyanobacteria and chloroplasts. Nature. 1999;400(6740):159–162. http://dx.doi.org/10.1038/22101
David L, Marx A, Adir N. High-resolution crystal structures of trimeric and rod phycocyanin. J Mol Biol. 2011;405(1):201–213. http://dx.doi.org/10.1016/j.jmb.2010.10.036
Engelken J, Brinkmann H, Adamska I. Taxonomic distribution and origins of the extended LHC (light-harvesting complex) antenna protein superfamily. BMC Evol Biol. 2010;10:233. http://dx.doi.org/10.1186/1471-2148-10-233
Umate P. Genome-wide analysis of the family of light-harvesting chlorophyll a/b-binding proteins in Arabidopsis and rice. Plant Signal Behav. 2010;5(12):1537–1542. http://dx.doi.org/10.4161/psb.5.12.13410
Montané MH, Kloppstech K. The family of light-harvesting-related proteins (LHCs, ELIPs, HLIPs): was the harvesting of light their primary function? Gene. 2000;258(1–2):1–8. http://dx.doi.org/10.1016/S0378-1119(00)00413-3
Koziol AG, Borza T, Ishida KI, Keeling P, Lee RW, Durnford DG. Tracing the evolution of the light-harvesting antennae in chlorophyll a/b-containing organisms. Plant Physiol. 2007;143(4):1802–1816. http://dx.doi.org/10.1104/pp.106.092536
van Heijenoort J. Formation of the glycan chains in the synthesis of bacterial peptidoglycan. Glycobiology. 2001;11(3):25R–36R. http://dx.doi.org/10.1093/glycob/11.3.25R
Vollmer W, Blanot D, de Pedro MA. Peptidoglycan structure and architecture. FEMS Microbiol. Rev. 2008;32(2):149–167. http://dx.doi.org/10.1111/j.1574-6976.2007.00094.x
Pfanzagl B, Zenker A, Pittenauer E, Allmaier G, Martinez-Torrecuadrada J, Schmid ER, et al. Primary structure of cyanelle peptidoglycan of Cyanophora paradoxa: a prokaryotic cell wall as part of an organelle envelope. J Bacteriol. 1996;178(2):332–339.
Pfanzagl B, Allmaier G, Schmid ER, de Pedro MA, Löffelhardt W. N-acetylputrescine as a characteristic constituent of cyanelle peptidoglycan in glaucocystophyte algae. J Bacteriol. 1996;178(23):6994–6997.
Schwartzbach SD, Osafune T, Löffelhardt W. Protein import into cyanelles and complex chloroplasts. Plant Mol Biol. 1998;38(1–2):247–263. http://dx.doi.org/10.1023/A:1006029919283
Plaimauer B, Pfanzagl B, Berenguer J, de Pedro MA, Löffelhardt W. Subcellular distribution of enzymes involved in the biosynthesis of cyanelle murein in the protist Cyanophora paradoxa. FEBS Lett. 1991;284(2):169–172. http://dx.doi.org/10.1016/0014-5793(91)80677-U
Iino M, Hashimoto H. Intermediate features of cyanelle division of Cyanophora paradoxa (Glaucocystophyta) between cyanobacterial and plastid division. J Phycol. 2003;39(3):561–569. http://dx.doi.org/10.1046/j.1529-8817.2003.02132.x
Berenguer J, Rojo F, de Pedro MA, Pfanzagl B, Löffelhardt W. Penicillin-binding proteins in the cyanelles of Cyanophora paradoxa, a eukaryotic photoautotroph sensitive to β-lactam antibiotics. FEBS Lett. 1987;224(2):401–405. http://dx.doi.org/10.1016/0014-5793(87)80492-1
Kies L. The effect of penicillin on the morphology and ultrastructure of Cyanophora, Gloeochaete and Glaucocystis (Glaucocystophyceae) and their cyanelles. Endocytobiosis Cell Res. 1988;5:361–372.
Sato M, Nishikawa T, Kajitani H, Kawano S. Conserved relationship between FtsZ and peptidoglycan in the cyanelles of Cyanophora paradoxa similar to that in bacterial cell division. Planta. 2007;227(1):177��187. http://dx.doi.org/10.1007/s00425-007-0605-0
Miyagishima SY, Takahara M, Mori T, Kuroiwa H, Higashiyama T, Kuroiwa T. Plastid division is driven by a complex mechanism that involves differential transition of the bacterial and eukaryotic division rings. Plant Cell. 2001;13(10):2257–68. http://dx.doi.org/10.1105/tpc.010185
Miyagishima S, Kabeya Y, Sugita C, Sugita M, Fujiwara T. DipM is required for peptidoglycan hydrolysis during chloroplast division. BMC Plant Biol. 2014;14:57. http://dx.doi.org/10.1186/1471-2229-14-57
Kies L. Untersuchungen zur Feinstruktur und taxonomischen Einordnung von Gloeochaete wittrockiana, einer apoplastidalen capsalen Alge mit blaugrünen Endosymbionten (Cyanellen). Protoplasma. 1976;87(4):419–446. http://dx.doi.org/10.1007/BF01624010
Mangeney E, Gibbs SP. Immunocytochemical localization of ribulose-1,5-bisphosphate carboxylase/oxygenase in the cyanelles of Cyanophora paradoxa and Glaucocystis nostochinearum. Eur J Cell Biol. 1987;43(1):65–70. http://dx.doi.org/10.1104/pp.84.4.1028
Burey SC, Fathi-Nejad S, Poroyko V, Steiner JM, Löffelhardt W, Bohnert HJ. The central body of the cyanelles of Cyanophora paradoxa: a eukaryotic carboxysome? Can J Bot. 2005;83(7):758–764. http://dx.doi.org/10.1139/b05-060
Giordano M, Beardall J, Raven JA. CO2 concentrating mechanisms in algae: mechanisms, environmental modulation, and evolution. Annu Rev Plant Biol. 2005;56:99–131. http://dx.doi.org/10.1146/annurev.arplant.56.032604.144052
Burey SC, Poroyko V, Ergen ZN, Fathi-Nejad S, Schüller C, Ohnishi N, et al. Acclimation to low [CO2] by an inorganic carbon-concentrating mechanism in Cyanophora paradoxa. Plant Cell Environ. 2007;30(11):1422–1435. http://dx.doi.org/10.1111/j.1365-3040.2007.01715.x
Raven JA. Carboxysomes and peptidoglycan walls of cyanelles: possible physiological functions. Eur J Phycol. 2003;38(1):47–53. http://dx.doi.org/10.1080/0967026031000096245
Börner G V, Mörl M, Janke A, Pääbo S. RNA editing changes the identity of a mitochondrial tRNA in marsupials. EMBO J. 1996;15(21):5949–5957.
Valach M, Burger G, Gray MW, Lang BF. Widespread occurrence of organelle genome-encoded 5S rRNAs including permuted molecules. Nucleic Acids Res. 2014;42(22):13764–13777. http://dx.doi.org/10.1093/nar/gku1266
Verbruggen H, Maggs CA, Saunders GW, Le Gall L, Yoon HS, de Clerck O. Data mining approach identifies research priorities and data requirements for resolving the red algal tree of life. BMC Evol Biol. 2010;10:16. http://dx.doi.org/10.1186/1471-2148-10-16
Leliaert F, Smith DR, Moreau H, Herron MD, Verbruggen H, Delwiche CF, et al. Phylogeny and molecular evolution of the green algae. Crit Rev Plant Sci 2012;31(1):1–46. http://dx.doi.org/10.1080/07352689.2011.615705
DOI: https://doi.org/10.5586/asbp.2015.020
|
|
|