File:Lotus initiative 1 biologically interpreted chemical tree.svg
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Captions
Captions
Figure illustrating as a biologically interpreted chemical tree the data of the article "The LOTUS Initiative for Open Natural Products Research: Knowledge Management through Wikidata"
Summary
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| Description |
English: TMAP visualizations of the chemical diversity present in LOTUS. Each dot corresponds to a chemical structure. A highly specific quassinoid (NXZXPYYKGQCDRO) (light green star) and an ubiquitous stigmastane steroid (KZJWDPNRJALLNS) (dark green diamond) are mapped as examples in all visualizations. In panel A., compounds (dots) are colored according to the NPClassifier chemical class they belong to. In panel B., compounds that are mostly reported in the Simaroubaceae family are highlighted in blue. Finally, in panel C., the compounds are colored according to the specificity score of chemical classes found in biological organisms. This biological specificity score at a given taxonomic level for a given chemical class is calculated as a Jensen-Shannon divergence. A score of 1 suggests that compounds are highly specific, 0 that they are ubiquitous. Zooms on a group of compounds of high biological specificity score (in pink) and on compounds of low specificity (blue) are depicted. An interactive HTML visualization of the LOTUS TMAP is available at https://lotus.nprod.net/post/lotus-tmap/ and archived at https://doi.org/10.5281/zenodo.5801807. |
| Date | |
| Source | Own work |
| Author | AdrianoRutz |
Licensing
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I, the copyright holder of this work, hereby publish it under the following license:
 
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This file is made available under the Creative Commons CC0 1.0 Universal Public Domain Dedication. |
| The person who associated a work with this deed has dedicated the work to the public domain by waiving all of their rights to the work worldwide under copyright law, including all related and neighboring rights, to the extent allowed by law. You can copy, modify, distribute and perform the work, even for commercial purposes, all without asking permission.
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| Date/Time | Thumbnail | Dimensions | User | Comment | |
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| current | 14:09, 22 December 2021 | | 1,200 × 1,278 (11.45 MB) | AdrianoRutz (talk | contribs) | update |
| 08:51, 22 December 2021 |  | 1,200 × 1,278 (11.45 MB) | AdrianoRutz (talk | contribs) | update | |
| 17:18, 25 May 2021 |  | 1,200 × 1,278 (2.89 MB) | AdrianoRutz (talk | contribs) | new version | |
| 09:08, 24 May 2021 |  | 1,200 × 1,278 (3.12 MB) | AdrianoRutz (talk | contribs) | new version | |
| 05:22, 24 May 2021 |  | 1,200 × 1,278 (2.65 MB) | AdrianoRutz (talk | contribs) | Uploaded own work with UploadWizard |
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