Stabilization of the V2 loop improves the presentation of V2 loop-associated broadly neutralizing antibody epitopes on HIV-1 envelope trimers (Q64228820)

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English	Stabilization of the V2 loop improves the presentation of V2 loop-associated broadly neutralizing antibody epitopes on HIV-1 envelope trimers	article

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22 April 2020

Stabilization of the V2 loop improves the presentation of V2 loop-associated broadly neutralizing antibody epitopes on HIV-1 envelope trimers (English)

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22 April 2020

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22 April 2020

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Andrew B Ward

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22 April 2020

Rogier W Sanders

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Rogier W Sanders

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22 April 2020

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22 April 2020

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Steven W de Taeye

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22 April 2020

Eden P Go

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22 April 2020

Kwinten Sliepen

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22 April 2020

Alba Torrents de la Peña

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22 April 2020

Kimberly Badal

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22 April 2020

Max Medina-Ramírez

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22 April 2020

Heather Desaire

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22 April 2020

Ian A Wilson

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22 April 2020

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6 February 2019

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22 April 2020

Journal of Biological Chemistry

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22 April 2020

294

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22 April 2020

14

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22 April 2020

5616-5631

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22 April 2020

Changes in growth properties on passage in tissue culture of viruses derived from infectious molecular clones of HIV-1LAI, HIV-1MAL, and HIV-1ELI.

1 reference

https://pubmed.ncbi.nlm.nih.gov/30728245

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Assignment of intrachain disulfide bonds and characterization of potential glycosylation sites of the type 1 recombinant human immunodeficiency virus envelope glycoprotein (gp120) expressed in Chinese hamster ovary cells

1 reference

https://pubmed.ncbi.nlm.nih.gov/30728245

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Uncommon gp120 cysteine residues found in primary HIV-1 isolates.

1 reference

https://pubmed.ncbi.nlm.nih.gov/30728245

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Immunological evidence for interactions between the first, second, and fifth conserved domains of the gp120 surface glycoprotein of human immunodeficiency virus type 1.

1 reference

https://pubmed.ncbi.nlm.nih.gov/30728245

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Association of human immunodeficiency virus type 1 envelope glycoprotein with particles depends on interactions between the third variable and conserved regions of gp120.

1 reference

https://pubmed.ncbi.nlm.nih.gov/30728245

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Sequential change of cysteine residues in hypervariable region 1 of glycoprotein 120 in primary HIV type 1 isolates of subtype B.

1 reference

https://pubmed.ncbi.nlm.nih.gov/30728245

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

An envelope modification that renders a primary, neutralization-resistant clade B human immunodeficiency virus type 1 isolate highly susceptible to neutralization by sera from other clades.

1 reference

https://pubmed.ncbi.nlm.nih.gov/30728245

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A recombinant human immunodeficiency virus type 1 envelope glycoprotein complex stabilized by an intermolecular disulfide bond between the gp120 and gp41 subunits is an antigenic mimic of the trimeric virion-associated structure

1 reference

https://pubmed.ncbi.nlm.nih.gov/30728245

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Enhancing the proteolytic maturation of human immunodeficiency virus type 1 envelope glycoproteins

1 reference

https://pubmed.ncbi.nlm.nih.gov/30728245

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Stabilization of the soluble, cleaved, trimeric form of the envelope glycoprotein complex of human immunodeficiency virus type 1.

1 reference

https://pubmed.ncbi.nlm.nih.gov/30728245

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Folding of HIV-1 envelope glycoprotein involves extensive isomerization of disulfide bonds and conformation-dependent leader peptide cleavage

1 reference

https://pubmed.ncbi.nlm.nih.gov/30728245

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The V1/V2 domain of gp120 is a global regulator of the sensitivity of primary human immunodeficiency virus type 1 isolates to neutralization by antibodies commonly induced upon infection

1 reference

https://pubmed.ncbi.nlm.nih.gov/30728245

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Human immunodeficiency virus type 1 V1-V2 envelope loop sequences expand and add glycosylation sites over the course of infection, and these modifications affect antibody neutralization sensitivity

1 reference

https://pubmed.ncbi.nlm.nih.gov/30728245

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

High incidence of unusual cysteine variants in gp120 envelope proteins from early HIV type 1 infections from a Phase 3 vaccine efficacy trial.

1 reference

https://pubmed.ncbi.nlm.nih.gov/30728245

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The carbohydrate at asparagine 386 on HIV-1 gp120 is not essential for protein folding and function but is involved in immune evasion.

1 reference

https://pubmed.ncbi.nlm.nih.gov/30728245

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Only five of 10 strictly conserved disulfide bonds are essential for folding and eight for function of the HIV-1 envelope glycoprotein

1 reference

https://pubmed.ncbi.nlm.nih.gov/30728245

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Evolution rescues folding of human immunodeficiency virus-1 envelope glycoprotein GP120 lacking a conserved disulfide bond

1 reference

https://pubmed.ncbi.nlm.nih.gov/30728245

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Optimization of human immunodeficiency virus type 1 envelope glycoproteins with V1/V2 deleted, using virus evolution

1 reference

https://pubmed.ncbi.nlm.nih.gov/30728245

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Broad and potent neutralizing antibodies from an African donor reveal a new HIV-1 vaccine target

1 reference

https://pubmed.ncbi.nlm.nih.gov/30728245

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Structural Basis for Broad and Potent Neutralization of HIV-1 by Antibody VRC01

1 reference

https://pubmed.ncbi.nlm.nih.gov/30728245

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A limited number of antibody specificities mediate broad and potent serum neutralization in selected HIV-1 infected individuals

1 reference

https://pubmed.ncbi.nlm.nih.gov/30728245

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Stabilized HIV-1 Envelope Glycoprotein Trimers Lacking the V1V2 Domain, Obtained by Virus Evolution

1 reference

https://pubmed.ncbi.nlm.nih.gov/30728245

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Analysis of the disulfide bond arrangement of the HIV-1 envelope protein CON-S gp140 ΔCFI shows variability in the V1 and V2 regions

1 reference

https://pubmed.ncbi.nlm.nih.gov/30728245

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Structural comparison of HIV-1 envelope spikes with and without the V1/V2 loop

1 reference

https://pubmed.ncbi.nlm.nih.gov/30728245

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Potent and broad neutralization of HIV-1 subtype C by plasma antibodies targeting a quaternary epitope including residues in the V2 loop

1 reference

https://pubmed.ncbi.nlm.nih.gov/30728245

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The neutralization breadth of HIV-1 develops incrementally over four years and is associated with CD4+ T cell decline and high viral load during acute infection

1 reference

https://pubmed.ncbi.nlm.nih.gov/30728245

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Longer V1V2 region with increased number of potential N-linked glycosylation sites in the HIV-1 envelope glycoprotein protects against HIV-specific neutralizing antibodies

1 reference

https://pubmed.ncbi.nlm.nih.gov/30728245

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Interaction of the gp120 V1V2 loop with a neighboring gp120 unit shields the HIV envelope trimer against cross-neutralizing antibodies

1 reference

https://pubmed.ncbi.nlm.nih.gov/30728245

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

HIV-1 envelope glycoprotein biosynthesis, trafficking, and incorporation

1 reference

https://pubmed.ncbi.nlm.nih.gov/30728245

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Analysis of a clonal lineage of HIV-1 envelope V2/V3 conformational epitope-specific broadly neutralizing antibodies and their inferred unmutated common ancestors

1 reference

https://pubmed.ncbi.nlm.nih.gov/30728245

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Broad neutralization coverage of HIV by multiple highly potent antibodies

1 reference

https://pubmed.ncbi.nlm.nih.gov/30728245

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Efficiency of neutralizing antibodies targeting the CD4-binding site: influence of conformational masking by the V2 loop in R5-tropic clade C simian-human immunodeficiency virus

1 reference

https://pubmed.ncbi.nlm.nih.gov/30728245

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A Potent and Broad Neutralizing Antibody Recognizes and Penetrates the HIV Glycan Shield

1 reference

https://pubmed.ncbi.nlm.nih.gov/30728245

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Structure of HIV-1 gp120 V1/V2 domain with broadly neutralizing antibody PG9

1 reference

https://pubmed.ncbi.nlm.nih.gov/30728245

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Subtle alteration of residues including N-linked glycans in V2 loop modulate HIV-1 neutralization by PG9 and PG16 monoclonal antibodies

1 reference

https://pubmed.ncbi.nlm.nih.gov/30728245

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Designed cyclic permutants of HIV-1 gp120: implications for envelope trimer structure and immunogen design

1 reference

https://pubmed.ncbi.nlm.nih.gov/30728245

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Naturally occurring substitutions of conserved residues in human immunodeficiency virus type 1 variants of different clades are involved in PG9 and PG16 resistance to neutralization

1 reference

https://pubmed.ncbi.nlm.nih.gov/30728245

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A short segment of the HIV-1 gp120 V1/V2 region is a major determinant of resistance to V1/V2 neutralizing antibodies

1 reference

https://pubmed.ncbi.nlm.nih.gov/30728245

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Broadly neutralizing antibodies against HIV-1: templates for a vaccine

1 reference

https://pubmed.ncbi.nlm.nih.gov/30728245

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Asymmetric recognition of the HIV-1 trimer by broadly neutralizing antibody PG9.

1 reference

https://pubmed.ncbi.nlm.nih.gov/30728245

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Co-evolution of a broadly neutralizing HIV-1 antibody and founder virus

1 reference

https://pubmed.ncbi.nlm.nih.gov/30728245

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Delineating antibody recognition in polyclonal sera from patterns of HIV-1 isolate neutralization

1 reference

https://pubmed.ncbi.nlm.nih.gov/30728245

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Influences on trimerization and aggregation of soluble, cleaved HIV-1 SOSIP envelope glycoprotein

1 reference

https://pubmed.ncbi.nlm.nih.gov/30728245

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A twin-cysteine motif in the V2 region of gp120 is associated with SIV envelope trimer stabilization

1 reference

https://pubmed.ncbi.nlm.nih.gov/30728245

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A next-generation cleaved, soluble HIV-1 Env trimer, BG505 SOSIP.664 gp140, expresses multiple epitopes for broadly neutralizing but not non-neutralizing antibodies

1 reference

https://pubmed.ncbi.nlm.nih.gov/30728245

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Cleavage strongly influences whether soluble HIV-1 envelope glycoprotein trimers adopt a native-like conformation

1 reference

https://pubmed.ncbi.nlm.nih.gov/30728245

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Crystal Structure of a Soluble Cleaved HIV-1 Envelope Trimer

1 reference

https://pubmed.ncbi.nlm.nih.gov/30728245

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Cryo-EM Structure of a Fully Glycosylated Soluble Cleaved HIV-1 Envelope Trimer

1 reference

https://pubmed.ncbi.nlm.nih.gov/30728245

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Viral escape from HIV-1 neutralizing antibodies drives increased plasma neutralization breadth through sequential recognition of multiple epitopes and immunotypes

1 reference

https://pubmed.ncbi.nlm.nih.gov/30728245

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Developmental pathway for potent V1V2-directed HIV-neutralizing antibodies

1 reference

https://pubmed.ncbi.nlm.nih.gov/30728245

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Development of broadly neutralizing antibodies from autologous neutralizing antibody responses in HIV infection

1 reference

https://pubmed.ncbi.nlm.nih.gov/30728245

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

CD4-induced activation in a soluble HIV-1 Env trimer

1 reference

https://pubmed.ncbi.nlm.nih.gov/30728245

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Deletion of the highly conserved N-glycan at Asn260 of HIV-1 gp120 affects folding and lysosomal degradation of gp120, and results in loss of viral infectivity

1 reference

https://pubmed.ncbi.nlm.nih.gov/30728245

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Glycosylation and disulfide bond analysis of transiently and stably expressed clade C HIV-1 gp140 trimers in 293T cells identifies disulfide heterogeneity present in both proteins and differences in O-linked glycosylation

1 reference

https://pubmed.ncbi.nlm.nih.gov/30728245

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

History of vaccination

1 reference

https://pubmed.ncbi.nlm.nih.gov/30728245

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Structure and immune recognition of trimeric pre-fusion HIV-1 Env.

1 reference

https://pubmed.ncbi.nlm.nih.gov/30728245

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Recombinant HIV envelope trimer selects for quaternary-dependent antibodies targeting the trimer apex

1 reference

https://pubmed.ncbi.nlm.nih.gov/30728245

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A native-like SOSIP.664 trimer based on an HIV-1 subtype B env gene

1 reference

https://pubmed.ncbi.nlm.nih.gov/30728245

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Comprehensive antigenic map of a cleaved soluble HIV-1 envelope trimer

1 reference

https://pubmed.ncbi.nlm.nih.gov/30728245

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

HIV-1 VACCINES. HIV-1 neutralizing antibodies induced by native-like envelope trimers

1 reference

https://pubmed.ncbi.nlm.nih.gov/30728245

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Immunization for HIV-1 Broadly Neutralizing Antibodies in Human Ig Knockin Mice

1 reference

https://pubmed.ncbi.nlm.nih.gov/30728245

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Crystal structure, conformational fixation and entry-related interactions of mature ligand-free HIV-1 Env

1 reference

https://pubmed.ncbi.nlm.nih.gov/30728245

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Influences on the Design and Purification of Soluble, Recombinant Native-Like HIV-1 Envelope Glycoprotein Trimers

1 reference

https://pubmed.ncbi.nlm.nih.gov/30728245

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Broadly Neutralizing Antibody 8ANC195 Recognizes Closed and Open States of HIV-1 Env.

1 reference

https://pubmed.ncbi.nlm.nih.gov/30728245

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Binding of inferred germline precursors of broadly neutralizing HIV-1 antibodies to native-like envelope trimers.

1 reference

https://pubmed.ncbi.nlm.nih.gov/30728245

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Rationally Targeted Mutations at the V1V2 Domain of the HIV-1 Envelope to Augment Virus Neutralization by Anti-V1V2 Monoclonal Antibodies.

1 reference

https://pubmed.ncbi.nlm.nih.gov/30728245

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identification of Common Features in Prototype Broadly Neutralizing Antibodies to HIV Envelope V2 Apex to Facilitate Vaccine Design

1 reference

https://pubmed.ncbi.nlm.nih.gov/30728245

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Affinity Maturation of a Potent Family of HIV Antibodies Is Primarily Focused on Accommodating or Avoiding Glycans.

1 reference

https://pubmed.ncbi.nlm.nih.gov/30728245

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Immunogenicity of Stabilized HIV-1 Envelope Trimers with Reduced Exposure of Non-neutralizing Epitopes

1 reference

https://pubmed.ncbi.nlm.nih.gov/30728245

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Native Conformation and Canonical Disulfide Bond Formation Are Interlinked Properties of HIV-1 Env Glycoproteins

1 reference

https://pubmed.ncbi.nlm.nih.gov/30728245

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

HIV-1 Envelope Trimer Design and Immunization Strategies To Induce Broadly Neutralizing Antibodies

1 reference

https://pubmed.ncbi.nlm.nih.gov/30728245

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Cryo-EM structure of a native, fully glycosylated, cleaved HIV-1 envelope trimer

1 reference

https://pubmed.ncbi.nlm.nih.gov/30728245

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Composition and Antigenic Effects of Individual Glycan Sites of a Trimeric HIV-1 Envelope Glycoprotein

1 reference

https://pubmed.ncbi.nlm.nih.gov/30728245

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Targeted Isolation of Antibodies Directed against Major Sites of SIV Env Vulnerability

1 reference

https://pubmed.ncbi.nlm.nih.gov/30728245

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Trimeric HIV-1-Env Structures Define Glycan Shields from Clades A, B, and G

1 reference

https://pubmed.ncbi.nlm.nih.gov/30728245

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

HIV-1 escapes from N332-directed antibody neutralization in an elite neutralizer by envelope glycoprotein elongation and introduction of unusual disulfide bonds

1 reference

https://pubmed.ncbi.nlm.nih.gov/30728245

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Induction of HIV Neutralizing Antibody Lineages in Mice with Diverse Precursor Repertoires

1 reference

https://pubmed.ncbi.nlm.nih.gov/30728245

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Antibody-virus co-evolution in HIV infection: paths for HIV vaccine development

1 reference

https://pubmed.ncbi.nlm.nih.gov/30728245

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Native-like Env trimers as a platform for HIV-1 vaccine design

1 reference

https://pubmed.ncbi.nlm.nih.gov/30728245

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Virus-like Particles Identify an HIV V1V2 Apex-Binding Neutralizing Antibody that Lacks a Protruding Loop

1 reference

https://pubmed.ncbi.nlm.nih.gov/30728245

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Open and closed structures reveal allostery and pliability in the HIV-1 envelope spike

1 reference

https://pubmed.ncbi.nlm.nih.gov/30728245

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Improving the Immunogenicity of Native-like HIV-1 Envelope Trimers by Hyperstabilization

1 reference

https://pubmed.ncbi.nlm.nih.gov/30728245

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Design and crystal structure of a native-like HIV-1 envelope trimer that engages multiple broadly neutralizing antibody precursors in vivo.

1 reference

https://pubmed.ncbi.nlm.nih.gov/30728245

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Elicitation of Neutralizing Antibodies Targeting the V2 Apex of the HIV Envelope Trimer in a Wild-Type Animal Model

1 reference

https://pubmed.ncbi.nlm.nih.gov/30728245

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

HIV Envelope Glycoform Heterogeneity and Localized Diversity Govern the Initiation and Maturation of a V2 Apex Broadly Neutralizing Antibody Lineage

1 reference

https://pubmed.ncbi.nlm.nih.gov/30728245

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Co-evolution of HIV Envelope and Apex-Targeting Neutralizing Antibody Lineage Provides Benchmarks for Vaccine Design.

1 reference

https://pubmed.ncbi.nlm.nih.gov/30728245

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1074/JBC.RA118.005396

1 reference

Europe PubMed Central

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22 April 2020

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22 April 2020

PubMed publication ID

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22 April 2020

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